The Calvi Bay is a low-runoff system located on the western coast of Corsica. It opens to the north to the Ligurian Sea, one of the main sub-basins of the Northwestern Mediterranean Sea. This dataset contains long-term time series (2012 - 2020) of high-performance liquid chromatography (HPLC) phytoplankton pigment concentrations measured at the Canyon head station, a station located in the outer part of the Calvi Bay. The pigments measured (in ng [...]