This data is associated with a paper presenting the results of a dual approach for assessing fossil benthic foraminiferal communities using both traditional morphology-based analyses and sedimentary ancient DNA (sedaDNA) metabarcoding. The main objectives are to test the feasibility of sedaDNA analysis to assess foraminiferal biodiversity in temperate shelf sediments off a major river system through time (Le Croisic), and to point out the similar [...]