Functional traits of marine protists

We combined the metabarcoding data of various coastal ecosystems and a newly developed trait-based approach to study the link between taxonomic and functional diversity across marine protistan communities of different size-classes. Environmental DNA was extracted and the V4 18S-rDNA genomic region was amplified and sequenced. In parallel, we developed a new theoretical framework of 30 biological traits, which cover the diversity and variety of marine protistan ecological strategies. Operational Taxonomic Units (OTUs) and their taxonomic reference (represented in the present table) from our metabarcoding dataset were associated with the 30 biological traits, using published and accessible information on protists (also referenced in the table). Three version of the table are available, 1) the full annotation table with references of annotations at the right of the table, 2) the full annotation table adapted to software R and 3) a reduced version with only 13 traits (also adapted to R), that was used in the cited publications.

We combined the metabarcoding data of various coastal ecosystems and a newly developed trait-based approach to study the link between taxonomic and functional diversity across marine protistan communities of different size-classes. Environmental DNA was extracted and the V4 18S-rDNA genomic region was amplified and sequenced. In parallel, we developed a new theoretical framework of 30 biological traits, which cover the diversity and variety of marine protistan ecological strategies. Operational Taxonomic Units (OTUs) and their taxonomic reference (represented in the present table) from our metabarcoding dataset were associated with the 30 biological traits, using published and accessible information on protists (also referenced in the table). Three version of the table are available, 1) the full annotation table with references of annotations at the right of the table, 2) the full annotation table adapted to software R and 3) a reduced version with only 13 traits (also adapted to R), that was used in the cited publications.

Disciplines

Environment, Biological oceanography

Keywords

Functional Diversity, Marine Protists, Coastal Ecosystems, Metabarcoding, Environmental DNA

Data

FileSizeFormatProcessingAccess
Functional traits (columns) and modalities (cells) annotated to taxonomic references of marine protists (rows), bibliography is available in the five last columns.
1 MoCSVRaw data
[R DIRECT INPUT] Functional traits (columns) and modalities (cells) annotated to taxonomic references of marine protists (rows)
613 KoCSVRaw data
[R DIRECT INPUT] Well annotated and used functional traits (columns), modalities (cells) and taxonomic references of marine protists (rows)
511 KoCSVRaw data
How to cite
Ramond Pierre, Siano Raffaele, Sourisseau Marc (2018). Functional traits of marine protists. SEANOE. https://doi.org/10.17882/51662
In addition to properly cite this dataset, it would be appreciated that the following work(s) be cited too, when using this dataset in a publication :
Ramond Pierre, Sourisseau Marc, Simon Nathalie, Romac Sarah, Schmitt Sophie, Rigaut-Jalabert Fabienne, Henry Nicolas, de Vargas Colomban, Siano Raffaele (2019). Coupling between taxonomic and functional diversity in protistan coastal communities. Environmental Microbiology. 21 (2). 730-749. https://doi.org/10.1111/1462-2920.14537, https://archimer.ifremer.fr/doc/00478/58964/

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