Genomics data of two domesticated strains of the microalga Tisochrysis lutea and annotation of transposable elements (version 2)

Date 2019
Author(s) Berthelier JeremyORCID1, 3, Saint-Jean BrunoORCID1, Casse Nathalie2, Rouxel Catherine1, Carrier GregoryORCID1
Affiliation(s) 1 : IFREMER, Physiology and Biotechnology of Algae Laboratory, rue de l’Ile d’Yeu, 44311, Nantes, France
2 : Biology of Organisms, Stress, Health, Environment, Le Mans University, 72000 Le Mans, France
3 : Plant Epigenetics Unit, Okinawa Institute of Science and Technology (OIST), 1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, 904-0495, Japan
DOI 10.17882/83584
Publisher SEANOE
Keyword(s) microalgae, domestication, intra-strain diversity, transposable elements
Abstract

The domestication of microalgae is an important way to accelerate and multiply the potential of microalgae for biotechnological applications. Nevertheless, although domestication of microalgae is now performed for decades, knowledges regarding the stability of their improved traits over time, and consequences at genetic level are very limited, if not unknown yet. Consequently, we investigated the impact of improvement programs on the phenotypic stability of domesticated strains after years, as well as consequences on their genome.

See previously Genome version 2: https://doi.org/10.17882/52231

Licence CC-BY-NC
Acknowledgements Region pays de la Loire for funding this study
Sensor metadata

Raw data sequencing in ONT and Ilumina (paired-end 150b) of T. lutea strain lipid + 

Raw data sequencing in ONT and Ilumina (paired-end 150b) of T. lutea strain lipid -

Raw data sequencing in ONT and Ilumina (paired-end 150b) of T. lutea strain wild type (Argenton)

Annotation file of mobile elements (version 2) in reference genome of Tiso-v2

List and sequence of mobile elements (version 2)

Data
File Size Format Processing Access
Transposabe elements in T-lutea 1 MB fasta Quality controlled data Open access
Annotation of transposable elements in genome-v2 of T-lutea 5 MB GFF Quality controlled data Open access
Raw data sequencing in Ilumina (paired-end 150b) of T. lutea strain lipid +  2 GB fastq Raw data Open access
Raw data sequencing in Ilumina (paired-end 150b) of T. lutea strain lipid - 2 GB fastq Raw data Open access
Raw data sequencing in Ilumina (paired-end 150b) of T. lutea Argenton wild type strain 2 GB fastq Raw data Open access
Raw data sequencing in ONT of T. lutea strain lipid - 274 MB fastq Raw data Open access
Raw data sequencing in ONT of T. lutea strain lipid +  644 MB fastq Raw data Open access
Raw data sequencing in ONT of T. lutea wild type strain  322 MB fastq Raw data Open access
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How to cite 

Berthelier Jeremy, Saint-Jean Bruno, Casse Nathalie, Rouxel Catherine, Carrier Gregory (2019). Genomics data of two domesticated strains of the microalga Tisochrysis lutea and annotation of transposable elements (version 2). SEANOE. https://doi.org/10.17882/83584